Am Campus 1
Klosterneuburg
Austria
The Imaging and Optics facility (IOF) at ISTA will be hosting a 2 day Imaris workshop with support from Bitplane on March 30-31, 2022 – for ISTA researchers mainly. The workshop program includes i) a general overview for new Imaris users, and ii) introduction to new features of the latest release of Imaris v9.9.
The update from our currently used version 9.3 brings new features, such as:
- Selection-based Classification of Spots and surfaces
- Bridge to Labkit and Ilastik, allowing direct import of (machine learning-based) external classifications.
- New visualization option
- Novelties in Vantage/ statistics, including time plots.
The workshop will be held in ‘hybrid’ format: ‘on site’ attendance and remote participation are available → Please provide how you plan to attend the workshop in registration form below.
Agenda:
Day 1: Wednesday, March 30th
9:30 – 9:45 Setup of the Virtual Machines and PC connection
9:45 – 10:30 Talk: General Overview about the Imaris Software
10:30-11:30 Hands-On: Import of Datasets, Deconvolution, Stitching
11:30-11:50 Break
11:50-13:00 Hands-On: Visualization and Animation (includes explanation of new procedures v9.9)
13:00-14:00 Lunch Break
14:00-15:00 Hands-On: Surfaces and Spots Segmentation, inter Object Statistics (new for v9.9)
15:00-15:30 Hands-On: Vantage Plotting for Surfaces and Spots, Spatial Statistics (new for v9.9)
15:00-16:00 Hands-On: Object Classification via Machine Learning (new for v9.9)
Day 2: Thursday, March 31st
9:30-10:30 Hands-On: Pixel Classification with Labkit and Import of Segmentation-data from Ilastik (new for v9.9)
10:30-11:30 Hands-On: Tracking of Moving Objects (new for v9.9)
11:30-11:50 Break
11:50-12:15 Hands-On: Classification and and Biological Events in Time Series (new for v9.9)
12:15-13:00 Hands-On: Batch Processing
13:00-14:00 Lunch Break
14:00-14:45 Hands-On: Filament Tracing (introduction)
14:45-15:30 Hands-On: Cell (introduction)
15:30-16:00 Hands-On: Colocalization (introduction)
Participation / Registration:
- If you are interested in participating, fill in the registration form below. Please also note that due to the limited amount of seats available, the registration is binding and at least partial attendance is mandatory upon registration.
- Please bring you own laptop or tune in from home with ISTA VPN (link will be provided timely for registered participants).